Diagnostics Directory Reference

Directory dependency graph for Diagnostics:

Files
file	CombineMaCh3Chains.cpp [code]
	Combine chains files produced by MCMC, enforcing the condition that all the files to combine were made using the exact same software versions and config files.
file	DiagMCMC.cpp [code]
file	GetPenaltyTerm.cpp [code]
	KS: This file contains the implementation of the function to extract specific penalty terms from systematic chains.
file	PlotLLHMap.cpp [code]
	Processing n-dimensional LLHMap outputs generating 1D and 2D profiled likelihoods as defined in config.
file	PlotMCMCDiag.cpp [code]
	KS: This script is used to analyse output form DiagMCMC.
file	ProcessMCMC.cpp [code]
	Main exectable responsible for different types of MCMC processing like drawing posteriors, triangle plots etc. Actual implantation of methods is in MCMCProcessor.
file	ReweightMCMC.cpp [code]
	This executable allow to reweight MCMC Chain, such technique is used to study impact of different priors without rerunning MCMC.
file	RHat.cpp [code]
	This executable calculates the \( \hat{R} \) estimator for Markov Chain Monte Carlo (MCMC) convergence.
file	RHat_HighMem.cpp [code]
file	SmearChain.cpp [code]
	Allows you to smear contour. For example after performing sets of study one finds out that used sets of uncertainty doesn't fully cover analysis need. Then one can smear additionally contour.